脈沖場凝膠電泳
PFEG(Plused-Field Gel Electrophoresis)技術是將細菌完全包裹在一種特殊的瓊脂中,然后加入一些化學試劑,比如十二烷基肌氨酸鈉,蛋白酶K等,將細菌中的蛋白成分全部溶化,消化,只剩下整個序列的DNA。經稀有限制性內切酶消化后,切割成大小不等的片斷,然后將其置于脈沖場電泳槽中電泳,完成片段分離的過程。
經染色脫色后,在讀膠儀上顯現酶切后的電泳圖譜,并經統計軟件的分析,即可判斷出條帶的不同,同時做出細菌的同源性分析,從而達到分型的目的。其中能影響電泳圖譜的參數很多,如電泳的轉換時間,電泳的總時間,電泳的角度,電壓,電泳液的溫度等等,且不同的參數會得到不同的電泳圖譜。
Pulsed Field Gel Electrophoresis Short Protocol
1. Reagents
1.1 Tris-EDTA Buffer (10mM Tris: 1mM EDTA, pH 8.0).
- 10ml of 1M Tris, pH 8.0
- 2ml of 0.5M EDTA, pH 8.0
- Dilute to 1000ml with molecular grade water.
1.2 Cell Suspension Buffer (CSB). (100mM Tris:100mM EDTA, pH 8.0).
- 10ml of 1M Tris, pH 8.0
- 20ml of 0.5M EDTA, pH 8.0
- Dilute to 100 ml with molecular grade water.
1.3 InCert agarose for plugs (1.6% InCert: 1% SDS agarose in TE).
- Weigh 0.8g InCert agarose into a 250 ml screw-cap flask
- Add 46.7 ml TE Buffer; swirl gently to disperse agarose.
- Microwave for 30 sec., mix gently and repeat for 10 sec.
- Place flask in 55-60℃ water bath for 5 min before adding SDS.
- Add 2.5 ml of 20% SDS and mix well.
- Keep at 55-60oC water bath until ready to use.
1.4 Cell Lysis Buffer (50mM Tris:50mM EDTA, pH, 8.0 + 1% Sarcosine).
- 25 ml of 1M Tris, pH 8.0
- 50ml of 0.5M EDTA, pH 8.0
- 50ml of 10% N-Lauryl Sarcosine.
- Dilute to 500 ml with sterile type 1 water.